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Fakhardji, W. (2021). Classical molecular dynamics simulations of collision-induced absorption: method development and evaluation. (Doctoral dissertation). Luleå University of Technology
Open this publication in new window or tab >>Classical molecular dynamics simulations of collision-induced absorption: method development and evaluation
2021 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

In this thesis collision-induced absorption (CIA) coefficients are computed using molec-ular dynamics (MD) simulations. Part I is dedicated to the theoretical frame of the method, from the classical theory radiation to the derivation of an absorption coefficient. The second part is a on the implementation of the method in the in-house software Spa-CIAL (Spectra of Collision-Induced Absorption with LAMMPS). This package is split in two parts: the molecular dynamics part being treated with the open source package LAMMPS, and the post-processing for the computation of the collision-induced absorp-tion with a Python code. The post-processing has been developed in two distinct ways each of them presenting different properties. The first one, based on what has been done previously, is designed to compute the dipole auto-correlation function (ACF) to obtain the CIA spectra after Fourier transformation. Many improvements has been made like the time averaging method is used in order to considerably increase the statistics requiring reasonable resource needs. The use of the fast Fourier transform algorithm (FFT) and the apodization procedure are also used for better accuracy of the results. The reformulation of the equations, especially with the Wiener-Kintchine (WK) theorem, gives a completely new implementation for which the CPU intensive computation of the dipole ACF is no longer needed. Instead, the contributions to the CIA spectrum are computed for each pair separately. In addition to improve significantly the performance of the code, it is now possible to separate the free-free and the bound-bound contributions. The comparison with the previous method (ACF) for the Ar-Xe system has shown a good accordance thus validating this new implementation. This great progress paves the way for the classical study of the dimers features in the absorption coefficient. The programs developed in this work can be adapted to handle molecular gas mixtures that are relevant in studies of radiative transfer in planetary atmospheres.

Place, publisher, year, edition, pages
Luleå University of Technology, 2021
Series
Doctoral thesis / Luleå University of Technology 1 jan 1997 → …, ISSN 1402-1544
National Category
Other Physics Topics
Research subject
Applied Physics
Identifiers
urn:nbn:se:ltu:diva-82174 (URN)978-91-7790-741-1 (ISBN)978-91-7790-742-8 (ISBN)
Public defence
2021-02-12, E632, 10:00 (English)
Opponent
Supervisors
Available from: 2021-01-07 Created: 2021-01-06 Last updated: 2021-01-27Bibliographically approved
Fakhardji, W., Szabó, P. & Gustafsson, M. (2021). Direct method for MD simulations of collision-induced absorption: application to an Ar–Xe gas mixture. Journal of Quantitative Spectroscopy and Radiative Transfer, 276, Article ID 107926.
Open this publication in new window or tab >>Direct method for MD simulations of collision-induced absorption: application to an Ar–Xe gas mixture
2021 (English)In: Journal of Quantitative Spectroscopy and Radiative Transfer, ISSN 0022-4073, E-ISSN 1879-1352, Vol. 276, article id 107926Article in journal (Refereed) Published
Abstract [en]

With the reformulation of the classical equations of collision-induced absorption, we present a method to perform the direct computation of the spectral density function. This way the absorption coefficient can be computed from classical molecular dynamics (MD) without the computationally demanding evaluation of the dipole autocorrelation function. In addition, we have developed an algorithm to extract the bound-to-bound dimer contribution to the MD simulated absorption. The method has been tested on the Ar–Xe rare gas system. Comparisons with quantum mechanical (QM) and conventional MD methods validate the approach. The obtained MD bound-to-bound spectra generally agree in shape and magnitude with QM results, including features stemming from rotations and vibrations of the Ar–Xe dimer.

Place, publisher, year, edition, pages
Elsevier, 2021
National Category
Other Physics Topics
Research subject
Applied Physics
Identifiers
urn:nbn:se:ltu:diva-87006 (URN)10.1016/j.jqsrt.2021.107926 (DOI)000701663500011 ()2-s2.0-85114987987 (Scopus ID)
Funder
Luleå University of TechnologyThe Kempe FoundationsKnut and Alice Wallenberg Foundation
Note

Validerad;2021;Nivå 2;2021-09-27 (alebob);

Forskningsfinansiär: COST (European Cooperation in Science and Technology)

Available from: 2021-09-08 Created: 2021-09-08 Last updated: 2021-10-07Bibliographically approved
Fakhardji, W., Szabo, P., El-Kader, M. & Gustafsson, M. (2020). Molecular dynamics calculations of collision-induced absorption in a gas mixture of neon and krypton. Journal of Chemical Physics, 152(23), Article ID 234302.
Open this publication in new window or tab >>Molecular dynamics calculations of collision-induced absorption in a gas mixture of neon and krypton
2020 (English)In: Journal of Chemical Physics, ISSN 0021-9606, E-ISSN 1089-7690, Vol. 152, no 23, article id 234302Article in journal (Refereed) Published
Abstract [en]

We continue the development of the in-house molecular dynamics software package SpaCIAL and test it for the computation of the collision-induced absorption coefficients for a neon (Ne) and krypton (Kr) gas mixture. An apodization procedure for the dipole autocorrelation function is implemented and tested. We also carry out a statistical study of the convergence rate with respect to ensemble size. The resulting absorption coefficients show a good accordance with quantum mechanical results. Comparison with laboratory measurements shows agreement within 10%–20% at T = 295 K. At T = 480 K, a larger difference of 40%–80% is observed, which can presumably be explained by experimental uncertainties. For the study, an empirical (Barker, Fisher, and Watts) interaction-potential [Mol. Phys. 21, 657 (1971)] for Ne–Kr has been developed. Ab initio {coupled cluster with singles and doubles (triples) [CCSD(T)]} potentials for Ne–Ne, Kr–Kr, and Ne–Kr have been computed, as well as the CCSD(T) interaction-induced Ne–Kr dipole moment curve.

Place, publisher, year, edition, pages
American Institute of Physics (AIP), 2020
National Category
Other Physics Topics
Research subject
Applied Physics
Identifiers
urn:nbn:se:ltu:diva-79571 (URN)10.1063/5.0006186 (DOI)000542649800001 ()32571059 (PubMedID)2-s2.0-85086915263 (Scopus ID)
Funder
Knut and Alice Wallenberg FoundationThe Kempe FoundationsSwedish National Infrastructure for Computing (SNIC)
Note

Validerad;2020;Nivå 2;2020-06-22 (alebob)

Available from: 2020-06-15 Created: 2020-06-15 Last updated: 2025-04-17Bibliographically approved
Fakhardji, W., Szabo, P., El-Kader, M., Haskopoulos, A., Maroulis, G. & Gustafsson, M. (2019). Collision-induced absorption in Ar–Kr gas mixtures: A molecular dynamics study with new potential and dipole data. Journal of Chemical Physics, 151(14), Article ID 144303.
Open this publication in new window or tab >>Collision-induced absorption in Ar–Kr gas mixtures: A molecular dynamics study with new potential and dipole data
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2019 (English)In: Journal of Chemical Physics, ISSN 0021-9606, E-ISSN 1089-7690, Vol. 151, no 14, article id 144303Article in journal (Refereed) Published
Abstract [en]

We have implemented a scheme for classical molecular dynamics simulations of collision-induced absorption. The program has been applied to a gas mixture of argon (Ar) and krypton (Kr). The simulations are compared with accurate quantum dynamical calculations. The comparisons of the absorption coefficients show that classical molecular dynamics is correct within 10% for photon wave numbers up to 220 cm−1 at a temperature of 200 K for this system. At higher temperatures, the agreement is even better. Molecular dynamics accounts for many-body interactions, which, for example, give rise to continuous dimer formation and destruction in the gas. In this way, the method has an advantage compared with bimolecular classical (trajectory) treatments. The calculations are carried out with a new empirical Ar–Kr pair potential. This has been obtained through extensive analysis of experimental thermophysical and transport properties. We also present a new high level ab initio Ar–Kr potential curve for comparison, as well as ab initio interaction-induced dipole curves computed with different methods. In addition, the Ar–Kr polarizability and hyperpolarizability are reported. A comparison of the computed absorption spectra with an experiment taken at 300 K shows satisfactory agreement although a difference in absolute magnitude of 10%–15% persists. This discrepancy we attribute mainly to experimental uncertainty.

Place, publisher, year, edition, pages
American Institute of Physics (AIP), 2019
National Category
Atom and Molecular Physics and Optics Physical Chemistry Other Physics Topics
Research subject
Applied Physics
Identifiers
urn:nbn:se:ltu:diva-76352 (URN)10.1063/1.5099700 (DOI)000500356200026 ()31615255 (PubMedID)2-s2.0-85073264154 (Scopus ID)
Funder
The Kempe FoundationsKnut and Alice Wallenberg Foundation
Note

Validerad;2019;Nivå 2;2019-10-15 (johcin)

Available from: 2019-10-10 Created: 2019-10-10 Last updated: 2021-01-06Bibliographically approved
Fakhardji, W., El-Kader, M., Haskopoulos, A., Maroulis, G. & Gustafsson, M. (2019). Contribution from dimers to the collision-induced absorption spectra in an Ar–Kr gas mixture. In: John Costello, Patrick Hayden, Emma Sokell, Peter van der Bugt (Ed.), 24th International Conference on Spectral Lines Shapes 17-22 June 2018, Dublin, Ireland: . Paper presented at 24th International Conference on Spectral Line Shapes (ICSLS 2018), 17-22 June, 2018, Dublin, Ireland. Institute of Physics (IOP), Article ID 012021.
Open this publication in new window or tab >>Contribution from dimers to the collision-induced absorption spectra in an Ar–Kr gas mixture
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2019 (English)In: 24th International Conference on Spectral Lines Shapes 17-22 June 2018, Dublin, Ireland / [ed] John Costello, Patrick Hayden, Emma Sokell, Peter van der Bugt, Institute of Physics (IOP), 2019, article id 012021Conference paper, Published paper (Refereed)
Abstract [en]

We have developed an empirical Barker, Fisher and Watts (BFW) interatomic potential for the Ar–Kr pair along with a dipole moment computed from first principles using Møller–Plesset perturbation theory to second order (MP2). Using these results, we performed molecular dynamics calculations to compute the Ar–Kr collision induced absorption (CIA) spectrum at different temperatures. By comparing them to other calculations using a two body interaction treated with quantum mechanics, we have shown that the difference is due to the dimer's contribution which grows in importance as the temperature is lowered.

Place, publisher, year, edition, pages
Institute of Physics (IOP), 2019
Series
Journal of Physics: Conference Series, ISSN 1742-6588, E-ISSN 1742-6596 ; 1289
National Category
Other Physics Topics
Research subject
Applied Physics
Identifiers
urn:nbn:se:ltu:diva-76697 (URN)10.1088/1742-6596/1289/1/012021 (DOI)2-s2.0-85073570898 (Scopus ID)
Conference
24th International Conference on Spectral Line Shapes (ICSLS 2018), 17-22 June, 2018, Dublin, Ireland
Available from: 2019-11-13 Created: 2019-11-13 Last updated: 2021-01-06Bibliographically approved
Fakhardji, W. & Gustafsson, M. (2017). Molecular dynamics simulations of collision-induced absorption: Implementation in LAMMPS. Paper presented at 23rd International Conference on Spectral Line Shapes, Toruń, Poland, 19-24 June 2016. Journal of Physics, Conference Series, 810(1), Article ID 012031.
Open this publication in new window or tab >>Molecular dynamics simulations of collision-induced absorption: Implementation in LAMMPS
2017 (English)In: Journal of Physics, Conference Series, ISSN 1742-6588, E-ISSN 1742-6596, Vol. 810, no 1, article id 012031Article in journal (Refereed) Published
Abstract [en]

We pursue simulations of collision-induced absorption in a mixture of argon and xenon gas at room temperature by means of classical molecular dynamics. The established theoretical approach (Hartmann et al. 2011 J. Chem. Phys. 134 094316) is implemented with the molecular dynamics package LAMMPS. The bound state features in the absorption spectrum are well reproduced with the molecular dynamics simulation in comparison with a laboratory measurement. The magnitude of the computed absorption, however, is underestimated in a large part of the spectrum. We suggest some aspects of the simulation that could be improved

Place, publisher, year, edition, pages
Institute of Physics (IOP), 2017
National Category
Other Physics Topics
Research subject
Applied Physics
Identifiers
urn:nbn:se:ltu:diva-62828 (URN)10.1088/1742-6596/810/1/012031 (DOI)000439640200031 ()2-s2.0-85017202239 (Scopus ID)
Conference
23rd International Conference on Spectral Line Shapes, Toruń, Poland, 19-24 June 2016
Note

Konferensartikel i tidskrift; 2017-03-31 (andbra)

Available from: 2017-03-31 Created: 2017-03-31 Last updated: 2021-01-06Bibliographically approved
Ekman, J., Antti, M.-L., Martin-Torres, J., Emami, R., Törlind, P., Kuhn, T., . . . Fakhardji, W. (2015). Projekt: Rymdforskarskolan.
Open this publication in new window or tab >>Projekt: Rymdforskarskolan
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2015 (English)Other (Other (popular science, discussion, etc.))
Abstract [en]

The Graduate School of Space Technology

National Category
Other Electrical Engineering, Electronic Engineering, Information Engineering Other Materials Engineering Aerospace Engineering Other Engineering and Technologies Other Mechanical Engineering Chemical Engineering
Research subject
Industrial Electronics; Engineering Materials; Atmospheric science; Onboard space systems; Product Innovation; Machine Elements; Chemical Technology; Entrepreneurship and Innovation
Identifiers
urn:nbn:se:ltu:diva-36154 (URN)8c1c49e5-8fd1-4b50-992e-abd48bc5619c (Local ID)8c1c49e5-8fd1-4b50-992e-abd48bc5619c (Archive number)8c1c49e5-8fd1-4b50-992e-abd48bc5619c (OAI)
Note

Publikationer: Opportunities and Challenges for Additive Manufacturing in Space Applications; Status: Ongoing; Period: 01/01/2015 → …; End date: 31/12/2018

Available from: 2016-09-30 Created: 2016-09-30 Last updated: 2025-02-18Bibliographically approved
Organisations
Identifiers
ORCID iD: ORCID iD iconorcid.org/0000-0003-3351-1141

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