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On the interactions of the receptor-binding domain of SARS-CoV-1 and SARS-CoV-2 spike proteins with monoclonal antibodies and the receptor ACE2
Universidade Federal do Triângulo Mineiro, Departamento de Saúde Coletiva, Rua Vigário Carlos, 38025-350 Uberaba, MG, Brazil; Universidade de São Paulo, Departamento de Ciências Biomoleculares, Faculdade de Ciências Farmacêuticas de Ribeirão Preto, Av. café, s/no – campus da USP, BR-14040-903 Ribeirão Preto SP, Brazil.
Luleå University of Technology, Department of Engineering Sciences and Mathematics, Energy Science. Department of Materials and Environmental Chemistry, Arrhenius Laboratory, Stockholm University, SE-106 91 Stockholm, Sweden; State Key Laboratory of Materials-Oriented and Chemical Engineering, Nanjing Tech University, Nanjing, 210009, PR China; Centre of Advanced Research in Bionanoconjugates and Biopolymers, Petru Poni Institute of Macromolecular Chemistry, Aleea Grigore Ghica-Voda, 41A, 700487 Iasi, Romania.ORCID iD: 0000-0001-9783-4535
Universidade de São Paulo, Departamento de Ciências Biomoleculares, Faculdade de Ciências Farmacêuticas de Ribeirão Preto, Av. café, s/no – campus da USP, BR-14040-903 Ribeirão Preto SP, Brazil; Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC 27695, United States.
2020 (English)In: Virus Research, ISSN 0168-1702, E-ISSN 1872-7492, Vol. 285, article id 198021Article in journal (Refereed) Published
Abstract [en]

A new betacoronavirus named SARS-CoV-2 has emerged as a new threat to global health and economy. A promising target for both diagnosis and therapeutics treatments of the new disease named COVID-19 is the coronavirus (CoV) spike (S) glycoprotein. By constant-pH Monte Carlo simulations and the PROCEEDpKa method, we have mapped the electrostatic epitopes for four monoclonal antibodies and the angiotensin-converting enzyme 2 (ACE2) on both SARS-CoV-1 and the new SARS-CoV-2 S receptor binding domain (RBD) proteins. We also calculated free energy of interactions and shown that the S RBD proteins from both SARS viruses binds to ACE2 with similar affinities. However, the affinity between the S RBD protein from the new SARS-CoV-2 and ACE2 is higher than for any studied antibody previously found complexed with SARS-CoV-1. Based on physical chemical analysis and free energies estimates, we can shed some light on the involved molecular recognition processes, their clinical aspects, the implications for drug developments, and suggest structural modifications on the CR3022 antibody that would improve its binding affinities for SARS-CoV-2 and contribute to address the ongoing international health crisis.

Place, publisher, year, edition, pages
Elsevier, 2020. Vol. 285, article id 198021
Keywords [en]
Epitopes, Binding affinity, Antibody development, Host-pathogen interaction, Electrostatic interactions, Antigenic analysis, Computer simulation, pH effect, Coronavirus, SARS-CoV-2, ACE2, Protein-protein interaction
National Category
Energy Engineering
Research subject
Energy Engineering
Identifiers
URN: urn:nbn:se:ltu:diva-78931DOI: 10.1016/j.virusres.2020.198021ISI: 000540355300021PubMedID: 32416259Scopus ID: 2-s2.0-85085090137OAI: oai:DiVA.org:ltu-78931DiVA, id: diva2:1430951
Note

Validerad;2020;Nivå 2;2020-06-04 (alebob)

Available from: 2020-05-18 Created: 2020-05-18 Last updated: 2024-12-03Bibliographically approved

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Laaksonen, Aatto

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