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Rai, S., Bharti, P. S., Singh, R., Rastogi, S., Rani, K., Sharma, V., . . . Kumar, S. (2023). Circulating plasma miR-23b-3p as a biomarker target for idiopathic Parkinson's disease: comparison with small extracellular vesicle miRNA. Frontiers in Neuroscience, 17, Article ID 1174951.
Open this publication in new window or tab >>Circulating plasma miR-23b-3p as a biomarker target for idiopathic Parkinson's disease: comparison with small extracellular vesicle miRNA
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2023 (English)In: Frontiers in Neuroscience, ISSN 1662-4548, E-ISSN 1662-453X, Vol. 17, article id 1174951Article in journal (Refereed) Published
Abstract [en]

Background: Parkinson's disease (PD) is an increasingly common neurodegenerative condition, which causes movement dysfunction and a broad range of non-motor symptoms. There is no molecular or biochemical diagnosis test for PD. The miRNAs are a class of small non-coding RNAs and are extensively studied owing to their altered expression in pathological states and facile harvesting and analysis techniques.

Methods: A total of 48 samples (16 each of PD, aged-matched, and young controls) were recruited. The small extracellular vesicles (sEVs) were isolated and validated using Western blot, transmission electron microscope, and nanoparticle tracking analysis. Small RNA isolation, library preparation, and small RNA sequencing followed by differential expression and targeted prediction of miRNA were performed. The real-time PCR was performed with the targeted miRNA on PD, age-matched, and young healthy control of plasma and plasma-derived sEVs to demonstrate their potential as a diagnostic biomarker.

Results: In RNA sequencing, we identified 14.89% upregulated (fold change 1.11 to 11.04, p < 0.05) and 16.54% downregulated (fold change −1.04 to −7.28, p < 0.05) miRNAs in PD and controls. Four differentially expressed miRNAs (miR-23b-3p, miR-29a-3p, miR-19b-3p, and miR-150-3p) were selected. The expression of miR-23b-3p was “upregulated” (p = 0.002) in plasma, whereas “downregulated” (p = 0.0284) in plasma-derived sEVs in PD than age-matched controls. The ROC analysis of miR-23b-3p revealed better AUC values in plasma (AUC = 0.8086, p = 0.0029) and plasma-derived sEVs (AUC = 0.7278, p = 0.0483) of PD and age-matched controls.

Conclusion: We observed an opposite expression profile of miR-23b-3p in PD and age-matched healthy control in plasma and plasma-derived sEV fractions, where the expression of miR-23b-3p is increased in PD plasma while decreased in plasma-derived sEV fractions. We further observed the different miR-23b-3p expression profiles in young and age-matched healthy control.

Place, publisher, year, edition, pages
Frontiers Media S.A., 2023
Keywords
Parkinsion’s disease (PD), small extracellular vesicle (sEV), miRNA—microRNA, miR-23b-3p, biomarker
National Category
Cell and Molecular Biology Neurosciences
Research subject
Biomedical Engineering
Identifiers
urn:nbn:se:ltu:diva-102541 (URN)10.3389/fnins.2023.1174951 (DOI)001170487400001 ()38033547 (PubMedID)2-s2.0-85178201123 (Scopus ID)
Note

Validerad;2023;Nivå 2;2023-11-21 (hanlid);

Funder: Indian Council of Medical Research (ICMR) (2020-1194); Department of Health Research (DHR) (R.11013/21/2021-GIA/HR); Ministry of Health and Family Welfare

Full text license: CC BY

Available from: 2023-11-21 Created: 2023-11-21 Last updated: 2025-10-21Bibliographically approved
Sharma, V., Kumar, S. & Nikolajeff, F. (2023). Dissecting the multiomics atlas of extracellular vesicles in Parkinson's disease. In: ISEV2023 Abstract Book: . Paper presented at ISEV2023 Annual Meeting, International Society for Extracellular Vesicles, May 17-21, 2023, Seattle, Washington (pp. 251-251). John Wiley & Sons, Article ID PF17.01.
Open this publication in new window or tab >>Dissecting the multiomics atlas of extracellular vesicles in Parkinson's disease
2023 (English)In: ISEV2023 Abstract Book, John Wiley & Sons, 2023, p. 251-251, article id PF17.01Conference paper, Oral presentation with published abstract (Other academic)
Place, publisher, year, edition, pages
John Wiley & Sons, 2023
Series
Journal of Extracellular Vesicles, ISSN 2001-3078, E-ISSN 2001-3078 ; 12
National Category
Neurology
Research subject
Biomedical Engineering
Identifiers
urn:nbn:se:ltu:diva-100017 (URN)10.1002/jev2.12329 (DOI)
Conference
ISEV2023 Annual Meeting, International Society for Extracellular Vesicles, May 17-21, 2023, Seattle, Washington
Available from: 2023-08-15 Created: 2023-08-15 Last updated: 2025-10-21Bibliographically approved
Sharma, V., Nikolajeff, F. & Kumar, S. (2023). Employing nanoparticle tracking analysis of salivary neuronal exosomes for early detection of neurodegenerative diseases. Translational Neurodegeneration, 12(1), Article ID 7.
Open this publication in new window or tab >>Employing nanoparticle tracking analysis of salivary neuronal exosomes for early detection of neurodegenerative diseases
2023 (English)In: Translational Neurodegeneration, ISSN 2047-9158, Vol. 12, no 1, article id 7Article in journal (Refereed) Published
Abstract [en]

Neurodegenerative diseases are a set of progressive and currently incurable diseases that are primarily caused by neuron degeneration. Neurodegenerative diseases often lead to cognitive impairment and dyskinesias. It is now well recognized that molecular events precede the onset of clinical symptoms by years. Over the past decade, intensive research attempts have been aimed at the early diagnosis of these diseases. Recently, exosomes have been shown to play a pivotal role in the occurrence and progression of many diseases including cancer and neurodegenerative diseases. Additionally, because exosomes can cross the blood–brain barrier, they may serve as a diagnostic tool for neural dysfunction. In this review, we detail the mechanisms and current challenges of these diseases, briefly review the role of exosomes in the progression of neurodegenerative diseases, and propose a novel strategy based on salivary neuronal exosomes and nanoparticle tracking analysis that could be employed for screening the early onset of neurodegenerative diseases.

Place, publisher, year, edition, pages
Springer Nature, 2023
Keywords
Exosomes, Parkinson’s disease, Alzheimer’s disease, Neurodegenerative disease, Diagnosis, Prognosis, Extracellular vesicles, Nanoparticle tracking analysis
National Category
Neurosciences
Research subject
Biomedical Engineering
Identifiers
urn:nbn:se:ltu:diva-95553 (URN)10.1186/s40035-023-00339-z (DOI)000926533500001 ()36747288 (PubMedID)2-s2.0-85147582726 (Scopus ID)
Funder
VinnovaThe Kempe Foundations
Note

Validerad;2023;Nivå 2;2023-02-20 (johcin);

Funding: Indian Council of Medical Research; Indian Department of Health Research (DHR)

Available from: 2023-02-08 Created: 2023-02-08 Last updated: 2025-10-21Bibliographically approved
Rastogi, S., Rani, K., Rai, S., Singh, R., Bharti, P. S., Sharma, V., . . . Kumar, S. (2023). Fluorescence-tagged salivary small extracellular vesicles as a nanotool in early diagnosis of Parkinson’s disease. BMC Medicine, 21, Article ID 335.
Open this publication in new window or tab >>Fluorescence-tagged salivary small extracellular vesicles as a nanotool in early diagnosis of Parkinson’s disease
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2023 (English)In: BMC Medicine, E-ISSN 1741-7015, Vol. 21, article id 335Article in journal (Refereed) Published
Abstract [en]

Background: Parkinson’s disease is generally asymptomatic at earlier stages. At an early stage, there is an extensive progression in the neuropathological hallmarks, although, at this stage, diagnosis is not possible with currently available diagnostic methods. Therefore, the pressing need is for susceptibility risk biomarkers that can aid in better diagnosis and therapeutics as well can objectively serve to measure the endpoint of disease progression. The role of small extracellular vesicles (sEV) in the progression of neurodegenerative diseases could be potent in playing a revolutionary role in biomarker discovery.

Methods: In our study, the salivary sEV were efficiently isolated by chemical precipitation combined with ultrafiltration from subjects (PD = 70, healthy controls = 26, and prodromal PD = 08), followed by antibody-based validation with CD63, CD9, GAPDH, Flotillin-1, and L1CAM. Morphological characterization of the isolated sEV through transmission electron microscopy. The quantification of sEV was achieved by fluorescence (lipid-binding dye-labeled) nanoparticle tracking analysis and antibody-based (CD63 Alexa fluor 488 tagged sEV) nanoparticle tracking analysis. The total alpha-synuclein (α-synTotal) in salivary sEVs cargo was quantified by ELISA. The disease severity staging confirmation for n = 18 clinically diagnosed Parkinson’s disease patients was done by 99mTc-TRODAT-single-photon emission computed tomography.

Results: We observed a significant increase in total sEVs concentration in PD patients than in the healthy control (HC), where fluorescence lipid-binding dye-tagged sEV were observed to be higher in PD (p = 0.0001) than in the HC using NTA with a sensitivity of 94.34%. In the prodromal PD cases, the fluorescence lipid-binding dye-tagged sEV concentration was found to be higher (p = 0.008) than in HC. This result was validated through anti-CD63 tagged sEV (p = 0.0006) with similar sensitivity of 94.12%. We further validated our findings with the ELISA based on α-synTotal concentration in sEV, where it was observed to be higher in PD (p = 0.004) with a sensitivity of 88.24%. The caudate binding ratios in 99mTc-TRODAT-SPECT represent a positive correlation with sEV concentration (r = 0.8117 with p = 0.0112).

Conclusions: In this study, for the first time, we have found that the fluorescence-tagged sEV has the potential to screen the progression of disease with clinically acceptable sensitivity and can be a potent early detection method for PD.

Place, publisher, year, edition, pages
Springer Nature, 2023
Keywords
Alpha-synuclein, Nanoparticle tracking analysis, Parkinson’s disease, Prodromal, Saliva, Small extracellular vesicles, TRODAT scan
National Category
Neurology Neurosciences
Research subject
Biomedical Engineering
Identifiers
urn:nbn:se:ltu:diva-101572 (URN)10.1186/s12916-023-03031-1 (DOI)001063237800002 ()37667227 (PubMedID)2-s2.0-85169682986 (Scopus ID)
Note

Validerad;2023;Nivå 2;2023-10-18 (hanlid);

Funder: Indian Council of Medical Research (ICMR, Funding number: 2020–1194); Department of Health Research (DHR, Funding number: GIA-2020–000595)

Available from: 2023-10-18 Created: 2023-10-18 Last updated: 2025-10-21Bibliographically approved
Rastogi, S., Rani, K., Sharma, V., Bharti, P. S., Deo, K., Jain, V., . . . Koli, D. K. (2023). Osteogenic markers in peri‐implant crevicular fluid in immediate and delayed‐loaded dental implants: A randomized controlled trial. Clinical Implant Dentistry and Related Research, 25(3), 540-548
Open this publication in new window or tab >>Osteogenic markers in peri‐implant crevicular fluid in immediate and delayed‐loaded dental implants: A randomized controlled trial
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2023 (English)In: Clinical Implant Dentistry and Related Research, ISSN 1523-0899, E-ISSN 1708-8208, Vol. 25, no 3, p. 540-548Article in journal (Refereed) Published
Abstract [en]

Introduction

The study evaluates the levels of matrix metalloprotease-8 (MMP-8), and Cathepsin-K (CatK) in peri-implant crevicular fluid (PICF) among patients with immediate loaded (IL) and delayed-loaded (DL) implants at different time points to know the inflammation and osteogenic status.

Methods

The study population consisted of two groups (n = 25, each group) with a mean age of 28.7 ± 3.5 years, and PICF was collected. MMP-8 and CatK levels were quantified through ELISA.

Results

We observed the concentrations of inflammatory markers (MMP-8 and CatK) at three time points in the IL and DL groups. The mean concentration of MMP-8 in the IL group was 9468 ± 1230 pg/mL, 5547 ± 1088 pg/mL, and 7248 ± 1396 pg/mL at 2 weeks, 3 months, and 12 months, respectively; while in the DL group was 10 816 ± 779.7 pg/mL, 9531 ± 1245 pg/mL, and 9132 ± 1265 pg/mL at 2 weeks, 3 and 12 months, respectively. The mean concentration of Cat-K in the IL group was observed at 422.1 ± 36.46 pg/mL, 242.9 ± 25.87 pg/mL, and 469 ± 75.38 pg/mL at 2 weeks, 3, and 12 months, whereas in the DL group was 654.6 ± 152.9 pg/mL, 314.7 ± 28.29 pg/mL, and 539.8 ± 115.1 pg/mL at 2 weeks, 3 months and 12 months, respectively.

Conclusion

In this study, the levels of CatK and MMP-8 levels decline at 12 months in both groups, and the IL group shows lower values compared to the DL group; however, no significant changes were observed after analyses were adjusted for multiple comparisons (p > 0.025). Therefore, there is not much difference observed in the inflammation process between immediate and delayed loading. (Clinical trial identifier: CTRI/2017/09/009668).

Place, publisher, year, edition, pages
John Wiley & Sons, 2023
Keywords
biomarkers, bone formation, cathepsin K, dental implants, inflammation, matrix metalloprotease, osteocalcin, peri-implant crevicular fluid
National Category
Other Medical Biotechnology
Research subject
Biomedical Engineering
Identifiers
urn:nbn:se:ltu:diva-96300 (URN)10.1111/cid.13199 (DOI)000950709100001 ()36940923 (PubMedID)2-s2.0-85150905112 (Scopus ID)
Note

Validerad;2023;Nivå 2;2023-06-29 (sofila);

Funder: All-India Institute of Medical Sciences 

Available from: 2023-04-03 Created: 2023-04-03 Last updated: 2025-10-21Bibliographically approved
Sharma, V., Choudhury, S. P., Kumar, S. & Nikolajeff, F. (2023). Saliva based diagnostic methodologies for a fast track detection of autism spectrum disorder: A mini-review. Frontiers in Neuroscience, 16, Article ID 893251.
Open this publication in new window or tab >>Saliva based diagnostic methodologies for a fast track detection of autism spectrum disorder: A mini-review
2023 (English)In: Frontiers in Neuroscience, ISSN 1662-4548, E-ISSN 1662-453X, Vol. 16, article id 893251Article in journal (Refereed) Published
Abstract [en]

Autism spectrum disorder (ASD) is considered a complicated neurodevelopment disorder with rising prevalence globally. ASD is characterized by a series of events including varying degrees of defects in communication, learning, and social interaction which is accompanied by stereotypical behavioral patterns. Despite extensive research, the current diagnosis for ASD is complex and almost solely based on the behavioral assessments of the suspected individuals. The multifactorial etiopathology of this disease along with the diversity of symptoms among different individuals adds to the current intricacies for accurate prognosis of ASD. Hence, there exists a dire need for biologically relevant biomarkers for an early diagnosis and for tracking the efficacy of therapeutic interventions. Until recently, among various biofluids, saliva has gained increasing interest for biomarker identification, the advantages include the non-invasive nature and ease of sample handling. This mini-review aims to provide a succinct summary of recent literature on saliva-based diagnostic modalities for ASD, examine various studies that highlight the potential use of proteomic and/or RNA-based biomarkers. Finally, some conclusive perspectives of using the salivary system for ASD mechanistic details and diagnosis are also discussed.

Place, publisher, year, edition, pages
Frontiers Media S.A., 2023
Keywords
autism disorder, biomarkers, diagnosis, saliva, proteomic and RNA biomarkers
National Category
Psychiatry
Research subject
Biomedical Engineering
Identifiers
urn:nbn:se:ltu:diva-95437 (URN)10.3389/fnins.2022.893251 (DOI)000914764700001 ()36685230 (PubMedID)2-s2.0-85146443998 (Scopus ID)
Note

Validerad;2023;Nivå 2;2023-02-24 (joosat);

Licens fulltext: CC BY License

Available from: 2023-01-30 Created: 2023-01-30 Last updated: 2025-10-21Bibliographically approved
Choudhury, S. P., Bano, S., Sen, S., Suchal, K., Kumar, S., Nikolajeff, F., . . . Sharma, V. (2022). Altered neural cell junctions and ion-channels leading to disrupted neuron communication in Parkinson’s disease. npj Parkinson's Disease, 8(1), Article ID 66.
Open this publication in new window or tab >>Altered neural cell junctions and ion-channels leading to disrupted neuron communication in Parkinson’s disease
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2022 (English)In: npj Parkinson's Disease, E-ISSN 2373-8057, Vol. 8, no 1, article id 66Article, review/survey (Refereed) Published
Abstract [en]

Parkinson’s disease (PD) is a neurological disorder that affects the movement of the human body. It is primarily characterized by reduced dopamine levels in the brain. The causative agent of PD is still unclear but it is generally accepted that α-synuclein has a central role to play. It is also known that gap-junctions and associated connexins are complicated structures that play critical roles in nervous system signaling and associated misfunctioning. Thus, our current article emphasizes how, alongside α-synuclein, ion-channels, gap-junctions, and related connexins, all play vital roles in influencing multiple metabolic activities of the brain during PD. It also highlights that ion-channel and gap-junction disruptions, which are primarily mediated by their structural-functional changes and alterations, have a role in PD. Furthermore, we discussed available drugs and advanced therapeutic interventions that target Parkinson’s pathogenesis. In conclusion, it warrants creating better treatments for PD patients. Although, dopaminergic replenishment therapy is useful in treating neurological problems, such therapies are, however, unable to control the degeneration that underpins the disease, thereby declining their overall efficacy. This creates an additional challenge and an untapped scope for neurologists to adopt treatments for PD by targeting the ion-channels and gap-junctions, which is well-reviewed in the present article.

Place, publisher, year, edition, pages
Springer Nature, 2022
National Category
Neurosciences Clinical Laboratory Medicine
Research subject
Medical Engineering
Identifiers
urn:nbn:se:ltu:diva-91036 (URN)10.1038/s41531-022-00324-9 (DOI)000804757700001 ()35650269 (PubMedID)2-s2.0-85131052842 (Scopus ID)
Funder
Luleå University of Technology
Note

Validerad;2022;Nivå 2;2022-06-07 (joosat);

Funder: University of Delhi, India (IoE/2021/12/FRP)

Available from: 2022-06-07 Created: 2022-06-07 Last updated: 2025-10-21Bibliographically approved
Rizwana, T., Kothidar, A., Meghwani, H., Sharma, V., Shobhawat, R., Saini, R., . . . Dey, S. K. (2022). Comparative analysis of SARS-CoV-2 envelope viroporin mutations from COVID-19 deceased and surviving patients revealed implications on its ion-channel activities and correlation with patient mortality. Journal of Biomolecular Structure and Dynamics, 40(20), 10454-10469
Open this publication in new window or tab >>Comparative analysis of SARS-CoV-2 envelope viroporin mutations from COVID-19 deceased and surviving patients revealed implications on its ion-channel activities and correlation with patient mortality
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2022 (English)In: Journal of Biomolecular Structure and Dynamics, ISSN 0739-1102, E-ISSN 1538-0254, Vol. 40, no 20, p. 10454-10469Article in journal (Refereed) Published
Place, publisher, year, edition, pages
Taylor & Francis, 2022
National Category
Infectious Medicine
Identifiers
urn:nbn:se:ltu:diva-86517 (URN)10.1080/07391102.2021.1944319 (DOI)000670137800001 ()34229570 (PubMedID)2-s2.0-85109977308 (Scopus ID)
Available from: 2021-08-04 Created: 2021-08-04 Last updated: 2025-10-21Bibliographically approved
Sharma, V., Kumar, S. & Nikolajeff, F. (2022). Fluorescence tagged salivary exosomes as a nano tool in early diagnosis of Parkinson’s disease. In: Medicinteknikdagarna 2022: Abstracts, Sveriges Medicintekniska Förening, 2022: . Paper presented at Medicinteknikdagarna 2022, Luleå, Sweden, October 4-6, 2022. Sveriges Medicintekniska Förening
Open this publication in new window or tab >>Fluorescence tagged salivary exosomes as a nano tool in early diagnosis of Parkinson’s disease
2022 (English)In: Medicinteknikdagarna 2022: Abstracts, Sveriges Medicintekniska Förening, 2022, Sveriges Medicintekniska Förening , 2022Conference paper, Oral presentation with published abstract (Refereed)
Abstract [en]

Parkinson’s disease (PD) is generally asymptomatic at earlier stages. The pressing need is for susceptibility risk biomarkers, which can aid in better diagnosis and therapeutics and objectively serve to measure the endpoint of disease progression. The role of exosomes in the progression of neurodegenerative diseases is already reported and its cargo could be potent in playing a revolutionary role in biomarker discovery. In our study, the salivary exosomes were efficiently isolated by chemical precipitation from subjects (PD=70, healthy controls=26, and probable PD=08) followed by antibody-based validation through CD63, CD9, GAPDH, flotillin 1, L1CAM, and calnexin. Morphological characterization of the isolated exosomes through transmission electron microscopy (TEM) was also analyzed. The exosome quantification via fluorescence and antibody-based nanoparticle tracking analysis (NTA) was performed. The total alpha-synuclein (α-syntotal) in salivary exosomal cargo was quantified by ELISA. The disease severity staging confirmation was done by 99mTc-TRODAT-SPECT. We observed a significant increase in total exosome concentration in PD patients to the healthy control (HC) where fluorescence-tagged exosomes were observed to be higher in PD (p<0.0001) than the HC using NTA with a sensitivity of 94.34%. These results was validated through exosomes tagged with antibody CD63 (p=0.006) with a similar sensitivity of 94.12%. We further validated our findings with the ELISA-based α-syntotal concentration in exosomes, which was observed to be higher in PD with a sensitivity of 88.24%. The striatal binding ratios in 99mTc-TRODAT-SPECT shown positive correlation with fluorescent exosomes concentration r=0.3000, α-syntotal concentration r=0.8000. In this study, conclusively we have found that the fluorescence-tagged exosomes has potential to screen the progression of disease with clinically acceptable sensitivity and can be a potent early detection method for PD.

Place, publisher, year, edition, pages
Sveriges Medicintekniska Förening, 2022
Keywords
Pakinson's Disease, Exosomes, Biomarkers, Early disgnosis, Neurodegerative diseases
National Category
Neurology Gerontology, specialising in Medical and Health Sciences Public Health, Global Health and Social Medicine
Research subject
Biomedical Engineering
Identifiers
urn:nbn:se:ltu:diva-100681 (URN)
Conference
Medicinteknikdagarna 2022, Luleå, Sweden, October 4-6, 2022
Funder
Luleå University of Technology
Available from: 2023-08-22 Created: 2023-08-22 Last updated: 2025-10-21Bibliographically approved
Organisations
Identifiers
ORCID iD: ORCID iD iconorcid.org/0000-0003-4471-9546

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